Installation

SbmlInterface.jl is not yet available on the Julia package managing system. To install SbmlInterface please first clone this repository: $ git clone https://github.com/paulflang/SbmlInterface.jl.git As SbmlInterface.jl relies on the Python libsbml library, please make sure your version of Julia can communicate with a Python environment were libsbml is installed. Please follow the PyCall installation instructions or:

• create a Python virtual environment in the SbmlInterface.jl directory and activate it:

  $ cd SbmlInterface.jl/
  $ python3 -m venv venv
  $ source venv/bin/activate

• install python-libsbml to the python environment:

  $ pip install python-libsbml

• start the Julia REPL:

  $ julia

• and activate the Julia virtual environment:

  julia> ]
  (v1.5) pkg> activate .
  (SbmlInterface) pkg>

When using SbmlInterface Julia will be able to communicate with the python virtual environment where you have installed libsbml.